Plot the scores for a patient's trees. — plot_patient_trees_scores • revolver

Plots a barplot where each tree is a bar, with height proportional to the tree score and colour to its particular combination of transfer.

plot_patient_trees_scores(
  x,
  patient,
  transfer_palette = distinct_palette_few,
  ...
)

Arguments

x: A REVOLVER object.
patient: The id of a patient.
transfer_palette: A function that can be used to sample an arbitrary number of colours to identify the transfers.
...: Extra parameters (currently unused).

Value

A ggplot plot.

See also

Other Plotting functions: distinct_palette_few(), distinct_palette_many(), gradient_palette(), plot_DET_index(), plot_clusters(), plot_dendrogram(), plot_drivers_clonality(), plot_drivers_graph(), plot_drivers_occurrence(), plot_jackknife_cluster_stability(), plot_jackknife_coclustering(), plot_jackknife_trajectories_stability(), plot_patient_CCF_histogram(), plot_patient_data(), plot_patient_mutation_burden(), plot_patient_oncoprint()

Examples

# Data released in the 'evoverse.datasets'
data('TRACERx_NEJM_2017_REVOLVER', package = 'evoverse.datasets')

plot_patient_trees_scores(TRACERx_NEJM_2017_REVOLVER, 'CRUK0001')

plot_patient_trees_scores(TRACERx_NEJM_2017_REVOLVER, 'CRUK0002')