Plot the data for a patient.

This function creates a complex plot for the data of a patient, assembling plots returned from the following functions: 1) plot_patient_CCF_histogram, 2) plot_patient_mutation_burden, 3) plot_patient_oncoprint.

plot_patient_data(x, patient, ...)

Arguments

x

A REVOLVER cohort.

patient

A patient id.

...

Extra parameters passed to all the used plotting functions.

Value

A figure assembled with ggpubr.

See also

Other Plotting functions: distinct_palette_few(), distinct_palette_many(), gradient_palette(), plot_DET_index(), plot_clusters(), plot_dendrogram(), plot_drivers_clonality(), plot_drivers_graph(), plot_drivers_occurrence(), plot_jackknife_cluster_stability(), plot_jackknife_coclustering(), plot_jackknife_trajectories_stability(), plot_patient_CCF_histogram(), plot_patient_mutation_burden(), plot_patient_oncoprint(), plot_patient_trees_scores()

Examples

# Data released in the 'evoverse.datasets'
data('TRACERx_NEJM_2017_REVOLVER', package = 'evoverse.datasets')

plot_patient_data(TRACERx_NEJM_2017_REVOLVER, 'CRUK0001')
#> Warning: Removed 4 rows containing missing values or values outside the scale range
#> (`geom_text()`).
#> Warning: log-10 transformation introduced infinite values.
#> Warning: log-10 transformation introduced infinite values.
#> Warning: Removed 54 rows containing non-finite outside the scale range
#> (`stat_density2d()`).

plot_patient_data(TRACERx_NEJM_2017_REVOLVER, 'CRUK0002')
#> Warning: Removed 4 rows containing missing values or values outside the scale range
#> (`geom_text()`).
#> Warning: log-10 transformation introduced infinite values.
#> Warning: log-10 transformation introduced infinite values.
#> Warning: Removed 54 rows containing non-finite outside the scale range
#> (`stat_density2d()`).