Plot the dendrogram of REVOLVER"s clusters. — plot_dendrogram • revolver

Plot the dendrogram of REVOLVER"s clusters, where leaves are patient ids, coloured by cluster.

plot_dendrogram(x, cluster_palette = distinct_palette_few)

Arguments

x: A REVOLVER object with fits and clusters.
cluster_palette: A palette function that should return the colour of an arbitrary number of clusters.

Value

A ggplot plot.

See also

Other Plotting functions: distinct_palette_few(), distinct_palette_many(), gradient_palette(), plot_DET_index(), plot_clusters(), plot_drivers_clonality(), plot_drivers_graph(), plot_drivers_occurrence(), plot_jackknife_cluster_stability(), plot_jackknife_coclustering(), plot_jackknife_trajectories_stability(), plot_patient_CCF_histogram(), plot_patient_data(), plot_patient_mutation_burden(), plot_patient_oncoprint(), plot_patient_trees_scores()

Examples

# Data released in the 'evoverse.datasets'
data('TRACERx_NEJM_2017_REVOLVER', package = 'evoverse.datasets')

plot_dendrogram(TRACERx_NEJM_2017_REVOLVER)
#> Warning: No shared levels found between `names(values)` of the manual scale and the
#> data's colour values.