Package index

All functions

CNA()

Extract CNAs.

Mutations()

Extract mutations.

chr_coordinates_GRCh38

GRCh38 coordinates

chr_coordinates_hg19

hg19 coordinates

fit()

Fit timing of clonal peaks in cancer genome sequencing data

fit_h()

Get the fit to obtain the clocks posteriors

fit_variational_h()

fit_variational Function

get_clonal_peaks()

get_clonal_peaks Function

get_initialization()

get_initialization

karyo_to_int()

karyo_to_int Function

model_selection_h()

model_selection Function

pcawg_example

pcawg_example

pcawg_example_2

pcawg_example_2

plot_inference_h()

plot_inference_h Function

plot_timing()

Plot timing of clonal peaks in cancer genome sequencing data

prepare_input_data()

prepare_input_data Function