get_simulation Function
get_simulation.RdThis function allows you to obtain simulated data for copy number events.
Usage
get_simulation(
taus,
karyotypes,
purity = 0.9,
time_interval = 20,
l = 1e+07,
mu = 1e-04,
w = 0.01,
coverage = 100
)Arguments
- taus
= a vector of doubles between 0-1
- karyotypes
= a vector of the same length of taus of strings of the type "2:1", "2:0", "2:2"
- purity
sample purity
- time_interval
time interval not in 0-1, real number
- l
length of the segment considered
- mu
mutation rate
- w
cell division rate
- coverage
average number of reads that align to a reference base