Plot timing of clonal peaks in cancer genome sequencing data

This function generates a plot showing the timing of clonal peaks in cancer genome sequencing data.

Usage

plot_timing(fit_results, segments, colour_by = "karyotype", ref = "GRCh38")

Arguments

fit_results

A list containing the results of the fit_timing function, specifically summarized_results.

segments

A data frame containing segment information with columns chr, from, to, Major, and minor.

colour_by

A character string specifying the variable to color the plot by. Default is "karyotype".

ref

Reference genome desired. Either 'GRCh38' or 'hg19'

Value

A ggplot object showing the timing of clonal peaks.