Plot cnaqc choosing K

Plot cnaqc choosing K

Usage

plot_cnaqc_choose_K(
  x,
  K,
  chromosomes = paste0("chr", c(1:22)),
  add_mobster = FALSE,
  max_Y_height = 6,
  cn = "absolute",
  highlight = x$most_prevalent_karyotype,
  highlight_QC = FALSE
)

Arguments

x

A CNAqc object containing mutation data.

K

number of components choosen from the fit

chromosomes

A character vector of chromosome names to filter for (default: 'chr1' to 'chr22', 'X', 'Y').

add_mobster

TRUE or FALSE

max_Y_height

heiht plot

cn

type of cn

highlight

which karyotype to highlight

highlight_QC

FALSE

Value

Plot.