Function reference • TINC

Available data Example fit data, and data sampler.
`fit_example`	Example TINC fit
`random_TIN()`	Generate a random dataset for TINC.
Data processing Functions to pre-process the data, mainly parsers.
`load_TINC_input()`	Load TINC input data.
`load_VCF_Canvas()`	Canvas VCF parsing function
`load_VCF_Canvas_Manta()`	Merged Canvas and Manta VCF parsing function
`load_VCF_Strelka()`	Strelka 2 VCF parsing function
`load_VCF_CNA_DRAGEN()`	DRAGEN VCF CNA parsing function
`load_VCF_smallVar_DRAGEN()`	DRAGEN VCF small variants parsing function
Data analysis Functions to analyse the data, and plot results.
`autofit()`	Runs a TINC analysis.
`to_string()`	Dataframe description of a TINC fit
`plot_simple_report()`	Plot a strip short report of the TINC analysis.
`plot_full_page_report()`	Plot a full page detailed report of the TINC analysis
S3 functions Functions to print and plot a `tinc_obj`
`plot(<tin_obj>)`	Plot a TINC analysis.
`print(<tin_obj>)`	Print a TINC object to screen
CHIP analysis Functions to check for the presence of clonal hematopoiesis in normal/tumour bams
`check_CHIP_variants()`	Check for CHIP variants in normal and tumour at high VAF

Reference