Strelka 2 VCF parsing function

Source: R/parsers.R

Parse a VCF file from Srelka 2, which stores for PASS SNVs the read depth of the alleles in the nornmal and tumour

load_VCF_Strelka(file)

Arguments

file

is Strelka 2 vcf file path

Value

Allele depths for normal and tumour for all PASS autosome SNVs

Examples

# not run
if (FALSE) {
 load_VCF_Strelka("Myfile.vcf")
}