Package index
-
init()
- Create a biPOD Object
-
fit_breakpoints()
- Fit breakpoints to bipod object
-
fit()
- Fit a Growth Model to a Bipod Object
-
fit_two_pop_model()
- Fit a Two-Population Growth Model to a bipod Object
-
plot_bayes_factor()
- Plot Bayes Factor Over Input Data
-
plot_breakpoints_posterior()
- Plot Posterior Distributions of Inferred Breakpoints
-
plot_elbo()
- Plot the Logarithm of the ELBO and Delta ELBO Mean
-
plot_fit()
- Plot the Fit Over the Input Data
-
plot_input()
- Plot Population Counts Over Time
-
plot_mixture_model_omega()
- Plot Omega Values from Mixture Model Fit
-
plot_normalized_growth_rate_posteriors()
- Plot Normalized Posterior Distributions of Growth Rates
-
plot_posterior()
- Plot Posterior Density for a Specific Parameter
-
plot_posteriors()
- Plot Posterior Densities for Multiple Parameters
-
plot_report()
- Generate a Comprehensive Report Plot
-
plot_t0_posterior()
- Plot Posteriors of t0
-
plot_traces()
- Plot Traces of Specified Parameters from a Fitted Stan Model
-
plot_two_pop_fit()
- Plot the Fit Over the Input Data for Two Populations
-
print(<bipod>)
- Print for class
'bipod'
.
-
sim_stochastic_exponential()
- Simulate a Stochastic Birth-Death Process
-
sim_stochastic_logistic()
- Simulate Population Growth with Logistic Dynamics
-
xenografts
- Xenografts data