Plot the Fit Over the Input Data — plot

Creates a plot showing the fit of the model over the input data. The plot can include a zoomed-in view, a secondary x-axis, and highlights for different time windows. Optionally, it can also display the posterior distribution for the parameter t0.

Usage

plot_fit(
  x,
  CI = 0.95,
  legend_labels = NULL,
  legend_title = "group",
  zoom = TRUE,
  full_process = TRUE,
  sec_axis_breaks = NULL,
  sec_axis_labels = NULL,
  t0_posterior_color = "darkorange",
  shadows_colors = NULL
)

Arguments

x: A bipod object that contains a 'fit' field.
CI: Numeric value between 0 and 1 representing the confidence interval for the fit. (default is 0.95)
legend_labels: Vector of labels for each unique group in x$counts$group. (default is NULL)
legend_title: Title for the legend. (default is "group")
zoom: Logical value indicating whether to present a zoomed-in view of the observations. (default is TRUE)
full_process: Logical value indicating whether to include the posterior for t0 in the plot. (default is TRUE)
sec_axis_breaks: Vector of values specifying where breaks should appear on the secondary x-axis. (default is NULL)
sec_axis_labels: Vector of labels for the secondary x-axis. (default is NULL)
t0_posterior_color: Color to use for the posterior distribution of t0. (default is 'darkorange')
shadows_colors: Colors to use for highlighting different time windows. (default is NULL)

Value

A ggplot2 object displaying the fit over the input data.