Extract SBS count data

Source: R/assign_sbs_contexts.R

Extract SBS data for 96 contexts and 6 possible substitutions, in matrix format.

SBS_counts(x)

Arguments

x

A CNAqc object.

Value

A one-row matrix with SBS data for 96 contexts and 6 possible substitutions.

Examples

if (FALSE) { # \dontrun{
data('example_dataset_CNAqc')
x = init(mutations = example_dataset_CNAqc$mutations, cna =example_dataset_CNAqc$cna, purity = example_dataset_CNAqc$purity)

x = SBS(x)

# SBS analysis
print(SBS_counts(x))
} # }