This method retrieves information about the samples whose cells were used as leaves of the samples forest.
Value
A dataframe containing, for each sample collected during the
simulation, the columns "name
", "time
", "id
", "ymin
", "xmin
",
"ymax
", "ymax
", "xmax
", "tumour_cells
", "tumour_cells_in_bbox
",
"DNA_quantity
", and "equivalent_normal_cells
". The columns "ymin
",
"xmin
", "ymax
", and "xmax
" report the boundaries of the sample
bounding box, while "tumour_cells
" and "tumour_cells_in_bbox
" are the
number of tumour cells in the sample and in the bounding box,
respectively. Finally, "DNA_quantity
" contains the overall number of
tumoral bases, i.e., the sum of the lengths of all the alleles of all the
sample tumoral cells, and "equivalent_normal_cells
" contains the number
of normal cells that contain as much DNA as the sample tumoral cells.
The "DNA_quantity
" is stored as a real number despite being a natural
number as it usually exceeds the largest natural number that can be
natively represented by R.
See also
SamplesForest$get_samples_info()
for usage examples,
Simulation$get_samples_info()