Getting the sampled cells CNAs

This method returns the CNAs of the sample cells.

Arguments

cell_id

The identifier of the cell whose CNAs are aimed (optional).

Value

A dataframe reporting cell_id, type ("A" for amplifications and "D" for deletions), chr, begin (i.e., the first CNA locus in the chromosome), end (i.e., last CNA locus in the chromosome), allele, src allele (the allele origin for amplifications, NA for deletions), and class (i.e., "driver", "passenger", "germinal"

or "preneoplastic").

Details

This method builds a dataframe representing all the CNAs in the cells sampled during the simulation and represented by the leaves of the phylogenetic forest.

See also

vignette("mutations") for usage examples