Getting the germinal mutations
Source:R/RcppExports.R
PhylogeneticForest-cash-get_germline_mutations.RdThis method returns the forest SNVs and indels.
Value
A dataframe reporting "chr", "chr_pos" (i.e., the position in
the chromosome), "allele" (in which the mutation occurs), "ref",
"alt", "cause", "type" (i.e., either "SNV" or "indel") and
"class" (i.e., "germinal").
Details
Its builds a dataframe representing all the germinal SNVs and indels of the cells represented in the phylogenetic forest. The dataframe also reports the allele in which the mutations occur to support double occurrencies due to CNAs.
See also
vignette("mutations") for usage examples