Getting the bulk allelic fragmentation dataframe

This method returns a dataframe representing the bulk allelic fragmentation of the genome.

Arguments

sample_name

The name of the sample whose bulk allelic fragmentation is aimed (optional).

Value

A dataframe reporting, for each genomic fragment and for all the allelic type on the genomic fragment, the chromosome (chr), the first base position (begin), the last base position (end), the number of copy of the major and minor alleles (major and minor, respectively), and the ratio between the number of cells exhibiting this allelic type and the total number of cells in the sample.

See also

vignette("mutations") for usage examples