Skip to contents

This property enables/disables the infinite sites model.

Details

When it is TRUE, the infinite sites model is enabled and new mutations are exclusively placed in mutation-free loci.

Examples

# create a demostrative mutation engine
m_engine <- MutationEngine(setup_code = "demo")
#> 
 [█---------------------------------------] 0% [00m:00s] Loading context index                                    

 [████████████████████████████████████████] 100% [00m:00s] Context index loaded                                   

#> 
 [█---------------------------------------] 0% [00m:00s] Loading RS index                                         

 [████████████████------------------------] 38% [00m:01s] Loading RS index                                        

 [███████████████████████████████---------] 75% [00m:02s] Loading RS index                                        

 [████████████████████████████████████████] 100% [00m:02s] RS index loaded                                        

#> 
 [█---------------------------------------] 0% [00m:00s] Loading germline                                         

 [████████████████████████████████████████] 100% [00m:00s] Germline loaded                                        


# the infinite sites model is enabled by default
m_engine$infinite_sites_model
#> [1] TRUE

# the infinite sites model can be disabled
m_engine$infinite_sites_model <- FALSE

m_engine$infinite_sites_model
#> [1] FALSE