Getting the germinal mutations
Source:R/RcppExports.R
PhylogeneticForest-cash-get_germline_mutations.RdThis method returns the forest SNVs and indels.
Value
A data frame reporting chr, chr_pos (i.e., the position in
the chromosome), allele (in which the mutation occurs), ref,
alt, cause, type (i.e., either "SNV" or "indel") and
class (i.e., "germinal").
Details
Its builds a data frame representing all the germinal SNVs and indels of the cells represented in the phylogenetic forest. The data frame also reports the allele in which the mutations occur to support double occurrences due to CNAs.
See also
vignette("mutations") for usage examples