This function creates a CNA.
Usage
CNA(type, chr, chr_pos, len, allele=NULL, src_allele=NULL)
Arguments
- type
The CNA type: either "A" or "D" for amplification and
deletion, respectively.
- chr
The name of the chromosome in which the CNA occurs.
- chr_pos
The position in the chromosome where the CNA occurs.
- len
The CNA length.
- allele
The allele in which the CNA occurs. (optional)
- src_allele
The allele from which the region is amplified. (optional,
for amplification only)
See also
Amplification to build an amplification; Deletion to build a
deletion.
Examples
# create an amplification
cna <- CNA("A", "X", 20002, 100)
cna
#> CNA(type: "A", chr: "X", chr_pos: 20002, length: 100)
# create a deletion from the allele 0
cna <- CNA("D", "Y", 101310, 205, allele = 0)
cna
#> CNA(type: "D", chr: "Y", chr_pos: 101310, length: 205, allele: 0)
