Get REVOLVER clusters information for this cohort

Source: R/getter_functions.R

For a set of `patients` - all by default - extract the clustering information computed by REVOVLER. The result is just a tibble with a column representing the patient id, and a column with the cluster label.

Cluster(x, patients = x$patients)

Arguments

x

A REVOLVER cohort with fits and clusters.

patients

Patients to use, all by default.

Value

A tibble with the required clustering assignments

Examples

# Data released in the 'evoverse.datasets'
data('TRACERx_NEJM_2017_REVOLVER', package = 'evoverse.datasets')

Cluster(TRACERx_NEJM_2017_REVOLVER)
#> # A tibble: 99 × 2
#>    patientID cluster
#>    <chr>     <chr>  
#>  1 CRUK0001  C2     
#>  2 CRUK0002  C1     
#>  3 CRUK0003  C2     
#>  4 CRUK0004  C2     
#>  5 CRUK0005  C3     
#>  6 CRUK0006  C3     
#>  7 CRUK0007  C2     
#>  8 CRUK0008  C1     
#>  9 CRUK0009  C3     
#> 10 CRUK0010  C2     
#> # ℹ 89 more rows

#' Cluster(TRACERx_NEJM_2017_REVOLVER, patients = c("CRUK0001", "CRUK0002"))