Example of a CONGAS+ object containg a subset of the multiome Lymphoma data.

data(multiome_congas_object)

Format

CONGAS+ object

Examples

data(multiome_congas_object)
print(multiome_congas_object)
#> 
#>  Warning ATAC 0-counts cells. 2 cells have no data in any of 22 segments, top 2 with missing data are:
#>  Cell GTCCTAGAGCCAAATC-1-ATAC with 1 0-segments (5%)
#>  Cell TCTCGCCCAAACATAG-1-ATAC with 1 0-segments (5%)
#> 
#> ── [ (R)CONGAS+ ] Bimodal lymphoma ─────────────────────────────────────────────
#> 
#> ── CNA segments (reference: GRCh38) 
#> → Input 22 CNA segments, mean ploidy 2.
#> 
#> 	  | | | |  |  |  | |  |  |  |  |  
#> 
#> 	 Ploidy:    0     1     2     3     4     5     *   
#> 
#> ── Modalities 
#> → RNA: 500 cells with 9887 mapped genes, 491284 non-zero values. Likelihood: Negative Binomial.
#> → ATAC: 500 cells with 56942 mapped peaks, 1529825 non-zero values. Likelihood: Negative Binomial.
#> ! Clusters: not available.
#> 
#> ──  LOG  ──
#> 
#> - 2023-10-17 11:01:23.266875 Created input object.
#> - 2023-10-17 11:01:27.083726 Filtered s123egments: [0|50|50]
#> [1] 0