Visualize the regression given the infered growth rates. — plot_growth_regression • lineaGT

Function to visualize the growht of each clone and lineage.

Usage

plot_growth_regression(
  x,
  highlight = c(),
  min_frac = 0,
  mutations = F,
  timepoints_to_int = list(),
  fit = F,
  show_best = T,
  ratio = NULL
)

Arguments

x: a mvnmm object.
highlight: a vector of clusters IDs to highlight in the plot.
min_frac: min_frac numeric value in [0,1] representing the minimum abundance to highlight a clone.
mutations: Boolean. If set to TRUE, the growth will be visualize for each cluster of mutations.
timepoints_to_int: a list to map each timepoint value to an integer.
fit: add

Examples

if (FALSE) plot_exp_fit(x)