Visualize the infered growth rates.

Function to visualize the growth coefficients for each clone and lineage.

Usage

plot_growth_rates(
  x,
  highlight = c(),
  min_frac = 0,
  mutations = F,
  timepoints_to_int = list(),
  fit = F,
  show_best = T
)

Arguments

x

a mvnmm object.

highlight

a vector of clusters IDs to highlight in the plot.

min_frac

min_frac numeric value in [0,1] representing the minimum abundance to highlight a clone.

mutations

Boolean. If set to TRUE, the growth will be visualize for each cluster of mutations.

timepoints_to_int

a list to map each timepoint value to an integer.

fit

add

Examples

if (FALSE) plot_growth_rates(x)