Filters the input dataset.

Function used to filter observations, i.e. ISs, in the input dataframe with coverage values.

Usage

filter_dataset(
  cov.df,
  min_cov = 5,
  min_frac = 0.05,
  k_interval = c(10, 20),
  metric = "calinski_harabasz_score",
  seed = 5
)

Arguments

cov.df

Input coverage dataset. It must have at least the columns coverage, timepoints, lineage, IS, with the coverage values, timepoint, lineage and IS, respectively.

min_cov

add

min_frac

add

k_interval

add

metric

add

seed

add

Value

a dataset of the same shape as the input one, with filtered observations.