Visualize classification results for individual observations.

Usage

plot_classification(x, sample, assembly = F)

Arguments

x: An object of class 'INCOMMON' containing the classification results, as produced by function classify.
sample: Sample name from the dataset.
assembly: Whether to assemble plots of mutations from the same sample in a multi-faceted plot.

Value

An object or a list of objects of class 'ggplot2'.

Examples

# First load example classified data
data(MSK_classified)
# Plot classification results for a specific sample
plot_classification(x = MSK_classified, sample = 'P-0002081-T01-IM3')
#> → No LUAD-specific prior probability specified for KRAS
#> → Using a pan-cancer prior
#> → No LUAD-specific prior probability specified for KRAS
#> → Using a pan-cancer prior
#> → No LUAD-specific prior probability specified for TP53
#> → Using a pan-cancer prior
#> → No LUAD-specific prior probability specified for TP53
#> → Using a pan-cancer prior
#> → No LUAD-specific prior probability specified for STK11
#> → Using a pan-cancer prior
#> → No LUAD-specific prior probability specified for STK11
#> → Using a pan-cancer prior
#> → No LUAD-specific prior probability specified for SMARCA4
#> → Using a pan-cancer prior
#> → No LUAD-specific prior probability specified for SMARCA4
#> → Using a pan-cancer prior
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