Visualize frequency distribution of INCOMMON classes. — plot_class_fraction • INCOMMON

Visualize frequency distribution of INCOMMON classes.

Usage

plot_class_fraction(x, tumor_type = NULL, gene = NULL, ...)

Arguments

x: A list of objects of class 'INCOMMON' containing the classification results, as produced by using function classify.
tumor_type: Tumor type for tumor-specific prior ('PANCA' for pan-cancer).
gene: Gene for gene-specific prior.
...: Default S3 method parameter.

Value

An object or a list of class 'ggplot2'.

Examples

# First load example classified data
data(MSK_PAAD_output)
# Plot class fraction for a specific gene and tumour type
MSK_PAAD_output = mutant_dosage_classification(MSK_PAAD_output)
#> Joining with `by = join_by(id)`
plot_class_fraction(x = MSK_PAAD_output, tumor_type = 'PAAD', gene = 'KRAS')