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Deafult QSUB setting to submit array jobs to PBSpro clusters.

Source: R/default_QSUB_config.R
default_QSUB_config.Rd

Deafult QSUB setting to submit array jobs to PBSpro clusters. This is handy to obtain a default input, and implement custom modificiations. These parameters are to be used by function run_PBSpro.

Usage

default_QSUB_config(
  project = "EASYPAR_Project",
  queue = "thin",
  walltime = "3:00:00",
  n_and_cpus = c(1, 16),
  jobID = "EASYPAR_Runner",
  output = "output.^array_index^.log",
  error = "error.^array_index^.err",
  J = ""
)

Value

A named list of QSUB settings.

See also

run_lsf

Examples

custom_QSUB = default_QSUB_config(walltime = '12:00:00')
custom_QSUB$`-l nodes=:ppn=` = c(1,8)
custom_QSUB$`-q` = "my_queue"