Function to visualize the estimated exposures

Usage

plot_exposures(
  x,
  types = get_types(x),
  samples = get_samples(x),
  clusters = get_cluster_labels(x),
  sample_name = FALSE,
  color_palette = NULL,
  add_centroid = FALSE,
  sort_by = NULL,
  exposure_thr = 0,
  quantile_thr = 0,
  signatures_list = get_signames(x)
)

Arguments

x: bascule object.
types: List of variant types to visualize.
samples: List of samples to visualize.
clusters: List of clusters to visualize.
sample_name: Logical. If `TRUE`, sample names will be reported on the x axis.
color_palette: Custom color palette for signatures.
add_centroid: Logical. If `TRUE`, also clustering's centroids will be plotted.
sort_by: Signature to sort patients' exposures by.
exposure_thr: Only signatures with exposures greater than `exposure_thr` in all samples will be highlighted.
quantile_thr: add
signatures_list: add

Value

ggplot object.