Function to visualize the input and reconstructed mutation counts.
plot_data.Rd
Function to visualize the input and reconstructed mutation counts.
Usage
plot_data(
x,
types = get_types(x),
samples = get_samples(x),
clusters = get_cluster_labels(x),
reconstructed = TRUE,
color_by_sigs = FALSE
)
Arguments
- x
bascule object.
- types
List of variant types to visualize.
- samples
List of samples to visualize.
- clusters
List of clusters to visualize.
- reconstructed
Logical. If `TRUE`, the reconstructed counts, i.e., computed as alpha x beta, will be visualized.
- color_by_sigs
Logical. If `TRUE`, each context will report the number of mutations split by signature.