Plot clustering centroids — plot_centroids • bascule

Plot clustering centroids

Usage

plot_centroids(
  x,
  types = get_types(x),
  clusters = get_cluster_labels(x),
  cls = NULL,
  sort_by = NULL,
  exposure_thr = 0,
  quantile_thr = 0,
  signatures_list = get_signames(x),
  ...
)

Arguments

x: bascule object.
types: List of variant types to visualize.
clusters: List of clusters to visualize.
cls: Custom color palette for signatures.
sort_by: Signature to sort patients' exposures by.
exposure_thr: Only signatures with exposures greater than `exposure_thr` in all samples will be highlighted.
quantile_thr: add
signatures_list: add
...: Additional arguments

Value

ggplot object.