Function to map de novo signatures to input catalogues

Function to map de novo signatures to input catalogues

Usage

convert_dn_names(x, x.simul = NULL, reference_cat = NULL, cutoff = 0.8)

Arguments

x

Object of class "bascule_obj"

x.simul

Another object of class "bascule_obj". If present, `x` de novo signatures will be mapped to `x_simul` ones

reference_cat

List of reference catalogues. If not `NULL`, `x` de novo signatures will be mapped to these catalogues.

cutoff

Threshold for the cosine similarity.

Value

Modified version of `x` with the mapped de novo names renamed.