Get the local path to tumourevo results for a SCOUT SPN

Downloads and extracts the tumourevo archive for a given SPN and purity (if not already cached) and returns the path to the extracted directory.

Usage

get_tumourevo_results(
  spn,
  purity,
  record_id = .scout_record_id(spn, purity, type = "tumourevo"),
  cache_dir = .scout_cache_dir(spn, purity)
)

Arguments

spn

SPN identifier, e.g. "SPN01".

purity

Sample purity: 0.9, 0.6, or 0.3.

record_id

Zenodo record ID. Defaults to the registered record for this SPN and purity.

cache_dir

Local directory to cache downloaded files.

Value

Invisible path to the directory containing the tumourevo results.

Examples

if (FALSE) { # \dontrun{
path <- get_tumourevo_results("SPN01", purity = 0.9)
} # }