Get tumourevo QC result paths
Usage
get_tumourevo_qc(spn, coverage, purity, vcf_caller, cna_caller, tool, sample)
Arguments
- spn
SPN identifier.
- coverage
Sequencing coverage (integer).
- purity
Sample purity (0–1).
- vcf_caller
VCF caller: "mutect2" or "strelka".
- cna_caller
CNA caller: "ascat" or "sequenza".
- tool
QC tool: "cnaqc", "join_cnaqc", or "tinc".
- sample
Sample name.
Value
Named list of file paths.
Examples
if (FALSE) { # \dontrun{
get_tumourevo_qc("SPN01", 100, 0.9, "mutect2", "ascat", "cnaqc", "SPN01_1")
} # }
