Get tumourevo joint CNAqc table (cnaqc2tsv)
Usage
get_tumourevo_joint_table(spn, coverage, purity, vcf_caller, cna_caller)
Arguments
- spn
SPN identifier, e.g. "SPN01".
- coverage
Sequencing coverage (integer).
- purity
Sample purity: 0.9, 0.6, or 0.3.
- vcf_caller
VCF caller: "mutect2" or "strelka".
- cna_caller
CNA caller: "ascat" or "sequenza".
Value
Path to the joint table TSV file.
Examples
if (FALSE) { # \dontrun{
get_tumourevo_joint_table("SPN04", 50, 0.6, "mutect2", "sequenza")
} # }
