Get SCOUT ground truth mutational signature exposures — get_ground_truth

Returns a tibble of ground truth signature exposures from the SCOUT metadata Google Sheet, with columns SPN, Sample, Coverage, Purity, Type, Signature, and Exposure. Optionally filtered by SPN, sample, and/or signature type.

Usage

get_ground_truth_exposures(spn = NULL, sample = NULL, type = NULL)

Arguments

spn: SPN identifier, e.g. "SPN01". If NULL, returns all SPNs.
sample: Sample identifier. If NULL, returns all samples.
type: Signature type, e.g. "SBS" or "ID". If NULL, returns all types.

Value

A tibble.

Examples

if (FALSE) { # \dontrun{
get_ground_truth_exposures()
get_ground_truth_exposures("SPN01")
get_ground_truth_exposures("SPN01", type = "SBS")
} # }