Get SCOUT ground truth CNA data

Returns a tibble of ground truth copy number segments from the SCOUT metadata Google Sheet, with columns SPN, Sample, Chromosome, Start, End, Major, minor, and CCF. Optionally filtered to a specific SPN and/or sample.

Usage

get_ground_truth_cna(spn = NULL, sample = NULL)

Arguments

spn

SPN identifier, e.g. "SPN01". If NULL, returns all SPNs.

sample

Sample identifier. If NULL, returns all samples for the selected SPN.

Value

A tibble.

Examples

if (FALSE) { # \dontrun{
get_ground_truth_cna()
get_ground_truth_cna("SPN01")
get_ground_truth_cna("SPN01", sample = "1.1")
} # }